Linezolid and other protein synthesis inhibitors

Linezolid and other protein synthesis inhibitors

Linezolid and tedizolid, as good by mouth as by drip, for MRSA, and linezolid for vancomycin-resistant enterococci too, with the blood count and serotonin to watch; the rarely used quinupristin–dalfopristin and lefamulin; and mupirocin and fusidic acid, mostly for the skin and the nose.

At a glance

  1. Linezolid and tedizolid, the oxazolidinones, bind the A site of the peptidyl transferase centre, on the 23S ribosomal RNA of the 50S subunit, and put the incoming tRNA out of place, so the peptide bond can't form. They reach gram-positive bacteria only, MRSA and vancomycin-resistant enterococci among them, and the usual resistance to older classes leaves them working.
  2. Linezolid is completely absorbed by mouth, so a tablet does what the drip does. It suppresses the marrow, platelets first, the longer it is given, so the blood count is checked weekly; harm to the mitochondria, mostly after 28 days, brings lactic acidosis and optic and peripheral neuropathy.
  3. Linezolid weakly inhibits monoamine oxidase: with SSRIs and other serotonergic drugs it can cause serotonin syndrome, and with sympathomimetics or much tyramine, a rise in blood pressure. Tedizolid is given once a day for six days.
  4. Quinupristin–dalfopristin, two streptogramins that work together, and lefamulin, a pleuromutilin for pneumonia, block the peptidyl transferase centre. Both are rarely used; lefamulin lengthens the QT interval and has many interactions.
  5. Mupirocin blocks isoleucyl-tRNA synthetase and is used only on the skin and in the nose, for impetigo and to clear S. aureus before surgery. Fusidic acid locks elongation factor G on the ribosome; it is used on the skin and in the eye, and by mouth, with a partner for deep infections and any statin stopped meanwhile.
  6. Mupirocin and fusidic acid on the skin or in the eye are compatible with pregnancy and breastfeeding. Linezolid, tedizolid, lefamulin and fusidic acid by mouth are avoided in pregnancy.

Drug classification

The remaining protein synthesis inhibitors fall into two groups. The "other antibiotics binding to the 50S subunit" are clindamycin and chloramphenicol, under Lincosamides and amphenicols, and quinupristin–dalfopristin and lefamulin, here. The "other protein synthesis inhibitors" are linezolid and mupirocin, with tedizolid, a newer oxazolidinone, and fusidic acid, used in Europe since the 1960s and not sold in the US.

Other antibiotics binding to the 50S subunit

Both block the peptidyl transferase centre, where the peptide bond is made.

  • Quinupristin–dalfopristintwo streptogramins, 30 to 70; injected
  • Lefamulina pleuromutilin; by mouth or injected

Other protein synthesis inhibitors

Each works in a way of its own, so the usual resistance to the older classes leaves them working; the cfr gene, below, is the exception.

  • Linezolidan oxazolidinone; by mouth or injected
  • Tedizolidan oxazolidinone; by mouth or injected, once a day
  • Mupirocinon the skin and in the nose
  • Fusidic acida fusidane; on the skin and eye, and by mouth

Pharmacokinetics

DrugGivenHalf-lifeCleared by
Linezolid600 mg twice a day, by mouth (about 100% absorbed) or into a vein5 to 7 hoursoxidation, not by CYP enzymes; mostly into the urine, about 30% unchanged
Tedizolid200 mg once a day for 6 days, by mouth (over 90% absorbed) or into a veinabout 12 hoursthe liver, as a sulphate, mostly into the faeces
Quinupristin–dalfopristininto a vein, every 8 to 12 hoursunder an hourmetabolised, into the bile
Lefamulintwice a day, by mouth (about 25% absorbed, on an empty stomach) or into a vein9 to 10 hoursthe liver, by CYP3A
Mupirocinon the skin or in the nose, barely absorbednot used in the bodywhat is absorbed is broken down to monic acid, into the urine
Fusidic acidon the skin or eye; by mouth (the infusion has been withdrawn)about 9 to 11 hours, building up over days of repeated dosesthe liver, into the bile

Linezolid spreads widely, into the cerebrospinal fluid at about 70% of the blood level. The dose isn't changed in kidney failure, but its two inactive metabolites build up, up to tenfold, and about 30% of a dose is lost in three hours of haemodialysis, so it is given after dialysis. Tedizolid is a phosphate prodrug, which phosphatases in the blood and tissues cleave to the active drug; kidney and liver failure don't change its dose. Lefamulin is taken an hour before or two hours after a meal, swallowed whole. Fusidic acid gets unusually well into tissues, bone and dead tissue among them, and leaves in the bile, so the dose isn't changed in kidney failure.

Pharmacodynamics

Oxazolidinones at the peptidyl transferase centre

Linezolid and tedizolid bind the 23S ribosomal RNA of the 50S subunit, at the peptidyl transferase centre. The classic account is that they stop the initiation complex forming: the first tRNA, carrying N-formylmethionine, can't settle with the messenger RNA on the 70S ribosome, so a protein never starts. Later structures show the drug in the A site, where it puts the incoming tRNA out of place, and it stalls ribosomes partway along a protein, not only at its start. Linezolid stops staphylococci and enterococci growing and kills most streptococci; tedizolid only stops them growing.

How chloramphenicol, clindamycin and linezolid stop a ribosome
A bacterial ribosome in section, reading a messenger RNA that runs across the picture: the small subunit below, holding the mRNA, with its E, P and A sites marked from left to right, and the large subunit above, with the exit tunnel running up through it and the peptidyl transferase centre on its underside beside the tunnel’s mouth. tRNAs stand on their codons in the E and P sites, the one in the P site holding the growing chain, which runs up into the tunnel. A third tRNA has docked in the A site, its amino acid in the peptidyl transferase centre beside the end of the chain. Step 1 of 6: A tRNA has docked. A tRNA has paired with the codon in the A site, and its amino acid sits in the peptidyl transferase centre, beside the end of the chain held by the tRNA in the P site.EPA

Step 1 of 6A tRNA has docked. A tRNA has paired with the codon in the A site, and its amino acid sits in the peptidyl transferase centre, beside the end of the chain held by the tRNA in the P site.

Point at a name or a part to light it.

Chloramphenicol, clindamycin and linezolid all bind the large subunit’s RNA at the peptidyl transferase centre, where the peptide bond is made, and keep the incoming amino acid from settling there. Clindamycin’s site overlaps the macrolides’, and one change to it, made by the erm gene, lets bacteria resist both. Our mitochondria have ribosomes much like a bacterium’s, which is how chloramphenicol causes a dose-related, reversible marrow suppression.

Simplified: not to scale, the drugs drawn larger than they are; the tRNAs drawn as flat cloverleaves, though each is folded in three dimensions; the elongation factors that bring each tRNA and move the ribosome along left out; the peptide bond and the move along the mRNA drawn as one step, the mRNA moving rather than the ribosome; one ribosome and one drug molecule, each drug shown in turn; each drug drawn as its rings, chains and heavy atoms, its hydrogens left out; the peptidyl transferase centre drawn as a patch at the large subunit’s underside, though the tRNAs’ ends reach into it; clindamycin’s block of the ribosome’s move along the mRNA left out; clindamycin shown on a ribosome well into a protein, though it acts as one is begun; the older account of linezolid, that it stops the first tRNA settling as a protein is begun, left to the text.

12 sources
  1. Parker N et al. Microbiology. OpenStax, 2016. 10.3 Structure and function of RNA
  2. Parker N et al. Microbiology. OpenStax, 2016. 11.4 Protein synthesis (translation)
  3. Parker N et al. Microbiology. OpenStax, 2016. 14.3 Mechanisms of antibacterial drugs
  4. Stevens CW. Brenner and Stevens' Pharmacology, 6th edition. Elsevier, 2023. Chapter 39, Antibiotics that inhibit bacterial protein synthesis
  5. Vázquez-Laslop N, Mankin AS. Trends Biochem Sci 2018;43:668–84. How macrolide antibiotics work
  6. Tenson T, Lovmar M, Ehrenberg M. The mechanism of action of macrolides, lincosamides and streptogramin B reveals the nascent peptide exit path in the ribosome. J Mol Biol 2003;330:1005–14.
  7. Arenz S, Wilson DN. Cold Spring Harb Perspect Med 2016;6:a025361. Bacterial protein synthesis as a target for antibiotic inhibition
  8. Dunkle JA, Xiong L, Mankin AS, Cate JHD. Proc Natl Acad Sci USA 2010;107:17152–7. Structures of the Escherichia coli ribosome with antibiotics bound near the peptidyl transferase center explain spectra of drug action
  9. Wilson DN et al. Proc Natl Acad Sci USA 2008;105:13339–44. The oxazolidinone antibiotics perturb the ribosomal peptidyl-transferase center and effect tRNA positioning
  10. PubChem. Chloramphenicol (CID 5959)
  11. PubChem. Clindamycin (CID 446598)
  12. PubChem. Linezolid (CID 441401)

They reach gram-positive bacteria: MRSA and other resistant staphylococci, vancomycin-resistant enterococci and penicillin-resistant pneumococci. Linezolid also reaches Nocardia and M. tuberculosis. Gram-negative bacteria are out of reach.

On the mitochondria, and on monoamine oxidase

Human mitochondria have ribosomes much like a bacterium's, and linezolid binds them at the same site and blocks their protein synthesis. That is the cause of its lactic acidosis, anaemia and optic and peripheral neuropathy, which grow with the length of the course.

Linezolid is also a reversible, non-selective inhibitor of monoamine oxidase. At antibacterial doses it is no antidepressant, but it slows the breakdown of serotonin, noradrenaline and tyramine: with serotonergic drugs it can bring on serotonin syndrome, and with sympathomimetics or a lot of tyramine, a rise in blood pressure. Tedizolid inhibits monoamine oxidase too; in studies it barely changed the response to pseudoephedrine or tyramine, though serotonin syndrome has been reported with it.

How bacteria resist the oxazolidinones

  • Mutations in the 23S ribosomal RNA at the binding site (G2576U and T2500A the commonest), or in ribosomal proteins L3 and L4, which defeat both drugs.
  • The cfr gene, on plasmids, which methylates a base nearby and defeats oxazolidinones, phenicols, lincosamides, pleuromutilins and streptogramin A at once. Tedizolid, which has a hydroxymethyl group where linezolid has an acetamide, still works against S. aureus that carry cfr without a mutation.
  • The optrA and poxtA genes, also mostly on plasmids, which make proteins that shield the ribosome from oxazolidinones and phenicols. Tedizolid doesn't escape these.

Streptogramins: quinupristin–dalfopristin

Two streptogramins given as one, 30 parts quinupristin, a streptogramin B, to 70 parts dalfopristin, a streptogramin A. Dalfopristin blocks the early phase of protein synthesis at the peptidyl transferase centre, and quinupristin, which binds where the macrolides do, the late phase. Together they act more strongly than either alone: they kill staphylococci, MRSA among them, and streptococci, and stop vancomycin-resistant E. faecium growing. E. faecalis resists them. The erm methylation that defeats macrolides and clindamycin defeats quinupristin too. The combination blocks CYP3A4.

Pleuromutilins: lefamulin

Lefamulin binds the A and P sites of the peptidyl transferase centre, in domain V of the 23S ribosomal RNA, and stops the tRNAs settling in place. It kills pneumococci, H. influenzae and Mycoplasma pneumoniae, macrolide-resistant ones too, stops S. aureus and S. pyogenes growing, and reaches Legionella and Chlamydia pneumoniae. It misses the Enterobacterales, Pseudomonas and Acinetobacter. Resistance to β-lactams, macrolides, quinolones and tetracyclines leaves it working; cfr, ribosome-protecting proteins (vga) and mutations in ribosomal proteins L3 and L4 defeat it.

Mupirocin and isoleucine

Mupirocin, made by Pseudomonas fluorescens, resembles the amino acid isoleucine. It competes with isoleucine for isoleucyl-tRNA synthetase, so the bacterium can't load isoleucine onto its tRNA, and protein synthesis stops. No other antibiotic works this way. It reaches staphylococci, MRSA among them, and streptococci, S. pyogenes among them, stopping their growth at low levels and killing them at the high levels on the skin. Gram-negative bacteria such as E. coli resist it, probably because it can't get through their outer membrane.

Resistance is low-level, from mutations in the bacterium's own synthetase gene (ileS), or high-level, from a second synthetase carried on a plasmid (mupA). Both follow heavy use of mupirocin, and resistance, the high-level kind above all, makes clearing MRSA from the nose more likely to fail.

Fusidic acid and elongation factor G

Fusidic acid is a steroid antibiotic, the only fusidane in use. It locks elongation factor G (EF-G), with its GDP, onto the ribosome, so the chain can't move on to the next codon and the ribosome can't be released at the end. It reaches staphylococci, MRSA and S. epidermidis among them.

Resistance comes easily. Single mutations in fusA, the gene for EF-G, give high-level resistance; small proteins that shield EF-G (fusB, fusC), carried on plasmids or other mobile pieces of DNA and selected mostly by its use on the skin, give low-level resistance. So by mouth it is given with a second antibiotic for deep or long infections, and on the skin in short courses.

Clinical indications

DrugTypical uses
Linezolidpneumonia, caught in the community or in hospital, caused by gram-positive bacteria, MRSA among them; complicated skin and soft tissue infections, when gram-positive bacteria are proven; vancomycin-resistant enterococci; multidrug-resistant tuberculosis, 600 mg once a day in the six-month regimens, above all BPaLM, with bedaquiline, pretomanid and moxifloxacin; nocardiosis
Tedizolidacute bacterial skin and skin structure infections (cellulitis, erysipelas, large abscesses, wound infections), for 6 days
Quinupristin–dalfopristinrarely now: complicated skin infections with meticillin-susceptible S. aureus or S. pyogenes; formerly, vancomycin-resistant E. faecium
Lefamulincommunity-acquired pneumonia in adults, when the usual antibiotics are unsuitable or have failed
Mupirocinlocalised impetigo (in the UK, if fusidic acid resistance is suspected or confirmed); clearing S. aureus, MRSA among it, from the nose
Fusidic acidlocalised impetigo, folliculitis and infected eczema, as a cream; bacterial conjunctivitis, as drops; staphylococcal infections of skin, bone and joints, by mouth, with a second antibiotic for deep ones
of linezolid taken by mouth, so the tablet does what the drip does
100%absorbed
the longest course in linezolid's licence; most of its nerve damage came after longer ones
28days
of tedizolid, once a day, for a skin infection
6days

Adverse drug reactions

  • Serious
    Marrow suppression with linezolid: thrombocytopenia and anaemia, both common, and leucopenia and pancytopenia, more the longer it is given, in older people, and in severe kidney disease or moderate to severe liver disease. The full blood count is checked weekly, whatever it was at the start; the counts usually recover when the drug is stopped. Tedizolid lowers them too, mostly when given for longer than its 6 days.
  • Life-threatening
    Serotonin syndrome with linezolid, and reported with tedizolid, when given with serotonergic drugs: agitation, confusion, fever, sweating, tremor, clonus and hyperreflexia.
  • Life-threatening
    Lactic acidosis with linezolid, from harm to the mitochondria: recurrent nausea or vomiting, abdominal pain, a low bicarbonate or fast breathing need attention at once.
  • Life-threatening
    Optic neuropathy with linezolid, sometimes going on to loss of sight, mostly in courses longer than 28 days. Any change in sight or colour vision means an eye examination.
  • Serious
    Peripheral neuropathy with linezolid, mostly in courses longer than 28 days.
  • Serious
    Convulsions, low sodium (from inappropriate ADH secretion) and rhabdomyolysis have been reported with linezolid, the convulsions mostly in people with a history of seizures.
  • Life-threatening
    A long QT interval with lefamulin, more when given into a vein, which with other drugs that lengthen it could bring on torsades de pointes; its own lowering of potassium adds to the risk. Atrial fibrillation is its commonest serious reaction.
  • Serious
    Joint and muscle pain, some severe, and inflamed veins with quinupristin–dalfopristin, for which it may be infused through a central line; the bilirubin rises, at times over five times normal.
  • Serious
    Liver injury with fusidic acid by mouth: raised enzymes, jaundice and cholestatic hepatitis, usually reversible, and uncommonly liver failure.
  • Serious
    C. difficile colitis with any of the drugs given into the body, from mild diarrhoea to fatal colitis, even more than two months after the course.
  • Life-threatening
    Severe skin reactions and anaphylaxis, rarely: DRESS, Stevens–Johnson syndrome and toxic epidermal necrolysis with fusidic acid by mouth; anaphylaxis, very rarely, even with mupirocin.

Side effects

  • Mild
    Diarrhoea, nausea and vomiting, common with the drugs given by mouth or into a vein, and headache with linezolid and tedizolid; with lefamulin the stomach upsets come mostly with the tablets.
  • Mild
    A metallic taste, and staining of the tongue and the surface of the teeth, with linezolid.
  • Mild
    Thrush, in the mouth or the vagina.
  • Mild
    Pain and redness where the drip goes in, raised liver enzymes and insomnia, with lefamulin.
  • Mild
    Stinging or irritation where mupirocin or fusidic acid is applied, in the nose or on the skin.

Contraindications

  • Contraindicated
    An allergy to the drug, and for lefamulin to any pleuromutilin, for quinupristin–dalfopristin to another streptogramin.
  • Caution
    Tedizolid after an allergy to linezolid, as the two can cross-react.
  • Contraindicated
    Linezolid with a monoamine oxidase inhibitor, or within two weeks of one: phenelzine, isocarboxazid, selegiline, moclobemide.
  • Avoid
    Linezolid with serotonergic or pressor drugs, or in conditions that a rise in serotonin or noradrenaline would worsen, unless the patient's blood pressure and state can be watched closely: SSRIs, tricyclics, triptans, pethidine, buprenorphine and buspirone; pseudoephedrine and other sympathomimetics, adrenaline, noradrenaline, dopamine and dobutamine; uncontrolled hypertension, phaeochromocytoma, carcinoid, thyrotoxicosis, bipolar depression, schizoaffective disorder and acute confusion.
  • Caution
    Linezolid with much tyramine-rich food, such as aged cheese, which can raise the blood pressure.
  • Caution
    Linezolid for more than 10 to 14 days, with low counts already, with other drugs that lower them, or in severe kidney disease or moderate to severe liver disease, only where the blood count can be watched closely; in severe kidney failure its metabolites build up too. Its licence hasn't established courses beyond 28 days, though the tuberculosis regimens give it for 26 weeks.
  • Contraindicated
    Lefamulin with a long QT or a risk of one: a known long QT, uncorrected low potassium, a slow heart rate that matters, unstable heart failure, past symptomatic ventricular arrhythmias; drugs that lengthen the QT, such as class IA and III antiarrhythmics; and drugs broken down by CYP3A that lengthen it, such as some antipsychotics, erythromycin and tricyclic antidepressants.
  • Contraindicated
    Lefamulin with drugs that change its levels or that it raises: rifampicin, phenytoin, carbamazepine, efavirenz and St John's wort lower it; with the tablets, clarithromycin, itraconazole, ritonavir and grapefruit juice raise it; and it raises repaglinide.
  • Caution
    Lefamulin tablets with other drugs broken down by CYP3A, such as midazolam, whose level they triple.
  • Contraindicated
    Fusidic acid by mouth with a statin, which has caused rhabdomyolysis, some of it fatal. The statin is stopped for the course and restarted seven days after the last dose; only in exceptional cases, under close supervision, are the two given together.
  • Avoid
    Fusidic acid by mouth with other drugs broken down by CYP3A4, ritonavir and saquinavir among them, as each may raise the other's level; with those two the liver may be harmed.
  • Caution
    Fusidic acid by mouth in liver or biliary disease, or with other drugs that harm the liver, with liver tests during the course; and with warfarin, whose effect it raises.
  • Caution
    Fusidic acid by mouth for newborns, or with jaundice, as it displaces bilirubin from albumin, with a theoretical risk of kernicterus.
  • Caution
    Quinupristin–dalfopristin with drugs broken down by CYP3A4, such as ciclosporin, midazolam and nifedipine, whose levels it raises.

Pregnancy and lactation

  • Avoid
    Linezolid in pregnancy. There are no adequate human data, and animal studies showed harm to reproduction, so its licence keeps it for when it is clearly needed.
  • Caution
    Linezolid in breastfeeding. It passes into milk in moderate amounts, under a tenth of the dose given to newborns, and it is probably compatible, with the baby watched. Its licence is more cautious, and says to stop breastfeeding.
  • Avoid
    Tedizolid in pregnancy. There are no human data, and studies in mice and rats showed effects on development; its licence prefers to avoid it. In breastfeeding, too little is known, and either the drug or breastfeeding is stopped.
  • Avoid
    Lefamulin in pregnancy and breastfeeding. There are no human data, and stillbirths rose in animals, so it is not recommended in pregnancy, and breastfeeding is stopped during the course. Women who could become pregnant use effective contraception, adding a barrier method to the pill.
  • Compatible
    Mupirocin in pregnancy and breastfeeding. Barely any is absorbed, and it is safe in breastfeeding; its licence, with no experience in pregnancy, asks that it be used when the benefit outweighs the risk.
  • Compatible
    Fusidic acid cream or eye drops in pregnancy and breastfeeding, which leave a negligible amount in the blood; the cream is not put on the breast.
  • Avoid
    Fusidic acid by mouth in pregnancy. There are few data; animal studies showed no harm, but its licence prefers to avoid it as a precaution.
  • Compatible
    Fusidic acid by mouth in breastfeeding. Very little passes into milk, and it is compatible, with the baby watched for jaundice in the first month, and more in a premature baby. Its licence asks that the benefit be weighed.

Check yourselfAnswer, then say how sure you were: a lucky guess still counts as a weak point.

1A man who takes sertraline needs linezolid for MRSA pneumonia. What is the main danger of the combination?

2What should be checked every week in a patient on linezolid?

3Why do lactic acidosis, anaemia and optic neuropathy appear with long courses of linezolid?

4Why is mupirocin used only on the skin and in the nose?

5A woman on atorvastatin needs fusidic acid tablets for a staphylococcal bone infection. What should happen to the statin?

6A child has a small patch of crusted, non-bullous impetigo and is otherwise well. What is suggested first in the UK?