Quinolones

Quinolones

Synthetic antibiotics that kill bacteria by trapping their topoisomerases on DNA they have cut. Well absorbed by mouth, they reach gram-negatives, Pseudomonas among them, and the newer ones pneumococci and tuberculosis, but Europe now restricts them, and the UK keeps them for when other antibiotics won't do, for rare harms that can last for good.

At a glance

  1. Quinolones are synthetic. They trap DNA gyrase and topoisomerase IV on the DNA they have cut, so the cuts become breaks and the bacterium dies: they are bactericidal, and kill faster the higher the level. Almost all in use are fluoroquinolones: ciprofloxacin, ofloxacin, levofloxacin and moxifloxacin.
  2. They are well absorbed by mouth, often as well as from a drip, and reach tissues and cells at levels above those in the blood. Magnesium, aluminium, iron and zinc, and with ciprofloxacin calcium, bind them in the gut, so antacids and supplements are taken hours apart.
  3. Ciprofloxacin is strongest against gram-negatives, Pseudomonas aeruginosa among them; levofloxacin and moxifloxacin add pneumococci, reach the atypical bacteria better, and treat drug-resistant tuberculosis. Resistance is common: about a quarter of invasive E. coli in Europe, and two in three gonococci, resist them.
  4. Since 2019 the EU has ruled them out for infections that are mild or get better on their own, and for mild to moderate ones unless the usual antibiotics can't be used; since 2024 the UK gives them only when the usual antibiotics are inappropriate. The reason is rare reactions of tendons, muscles, joints, nerves and mind that can disable for months or for good. They are stopped at the first sign.
  5. Watch also for torn tendons, worse with corticosteroids and over 60, a long QT, aortic aneurysm and dissection, a low or high blood sugar, seizures, worsening myasthenia and C. difficile. Ciprofloxacin blocks CYP1A2, so theophylline, clozapine and tizanidine build up.
  6. In pregnancy another antibiotic is usually tried first, though harm to the baby hasn't been shown, and a single dose of ciprofloxacin is given to prevent meningococcal disease. Ciprofloxacin and ofloxacin are compatible with breastfeeding. Their licences are stricter on both.

Drug classification

The first quinolone, nalidixic acid, was described in 1962, from work on antimalarial drugs. It was used mainly for urinary infections, as it reached useful levels in the urine but little in the blood. A fluorine atom, and then a piperazine ring, made the fluoroquinolones, norfloxacin and ciprofloxacin among the first, far more active and spread through the body; later drugs reached gram-positives better. In 2019 the EU suspended nalidixic acid and the other old quinolones still sold, pipemidic acid, cinoxacin and flumequine. The fluoroquinolones fall into two groups, around ciprofloxacin and around levofloxacin.

Fluoroquinolones mostly against gram-negatives

Strongest against Enterobacterales, Haemophilus, Neisseria and Pseudomonas aeruginosa, weak against streptococci and pneumococci.

  • Ciprofloxacinby mouth or into a vein; eye and ear drops
  • Ofloxacinby mouth; eye drops
  • Norfloxacinby mouth, little used now

Broad-spectrum fluoroquinolones

Keep most of the gram-negative reach, add pneumococci and reach the atypical bacteria better, so they treat pneumonia: the respiratory fluoroquinolones.

  • Levofloxacinby mouth or into a vein; inhaled in cystic fibrosis; eye drops
  • Moxifloxacinby mouth or into a vein; eye drops; reaches some anaerobes but not Pseudomonas
  • Delafloxacinby mouth or into a vein; reaches MRSA
  • Gemifloxacinby mouth; its EU application was withdrawn in 2009
  • Gatifloxacineye drops, not sold in the UK

Pharmacokinetics

Fluoroquinolones are absorbed well, levofloxacin completely, so a tablet often does the work of a drip: 500 mg of ciprofloxacin by mouth gives the same exposure as 400 mg into a vein. They spread widely and enter cells, into lung, kidney, prostate, bile and the female genital tract, often at two to five times the level in plasma, and into the neutrophils and macrophages that carry intracellular bacteria. Levofloxacin reaches the cerebrospinal fluid poorly.

In the gut they bind magnesium, aluminium, iron and zinc into complexes that aren't absorbed. Antacids, iron and zinc supplements, sucralfate and phosphate binders are spaced from the dose by the interval each product gives: 1 to 2 hours before or at least 4 hours after ciprofloxacin, 2 hours either side of levofloxacin, about 6 hours for moxifloxacin. Calcium matters mostly for ciprofloxacin: milk or yoghurt taken alone, or a calcium supplement, cuts its absorption, while the calcium in a meal hardly does. For levofloxacin and moxifloxacin calcium makes little difference.

DrugAbsorbed by mouthHalf-lifeHow it leaves
Ciprofloxacin70 to 80%4 to 7 hours, so twice a daymostly unchanged in the urine, and through the gut wall into the faeces; the dose is lowered when the creatinine clearance is 60 ml/minute or less; it inhibits CYP1A2
Ofloxacinalmost all6 to 7 hours80 to 90% unchanged in the urine; the dose is cut in kidney failure
Levofloxacin99 to 100%6 to 8 hours, once or twice a dayover 85% unchanged in the urine; the dose is cut when the creatinine clearance is 50 ml/minute or less
Moxifloxacinabout 91%about 12 hours, once a dayjoined to sulphate or glucuronide, not by the cytochromes, and leaves in faeces and urine; only about a fifth reaches the urine unchanged, so it isn't used for urinary infections, and its dose isn't changed in kidney failure

Pharmacodynamics

Trapped on cut DNA

Most bacteria have two type II topoisomerases; Mycobacterium tuberculosis has only gyrase. DNA gyrase undoes the twisting that builds up ahead of a replication fork, and topoisomerase IV untangles the two new chromosomes once they are copied. Both work by cutting both strands of the DNA, passing another stretch of the double helix through the gap, and sealing it again.

  1. 1

    The enzyme cuts both strands

    Gyrase or topoisomerase IV holds the cut ends while another stretch of DNA passes through.
  2. 2

    The drug wedges into the cut

    A fluoroquinolone binds where enzyme meets DNA and slips into the DNA at each cut, two drug molecules to a double break. A magnesium ion, bridged by water to a serine and an acidic residue of the enzyme, holds it in place. Now the enzyme can't reseal the break.
  3. 3

    Trapped cuts become breaks

    When a replication fork or RNA polymerase runs into a trapped enzyme, the cut becomes a lasting double-strand break. More breaks than the cell can repair kill it, so the drugs are bactericidal.
How a fluoroquinolone kills a bacterium
DNA gyrase on the bacterium’s DNA, side on. A double helix runs across the picture. The enzyme sits round its middle in two halves, each a GyrA below with a GyrB on top, the two GyrAs gripping the DNA where they will cut it and meeting again below a chamber. Between the two GyrBs, just above the DNA, they hold a second stretch of DNA, seen end on. Step 1 of 6: Gyrase holds two stretches of DNA. The two GyrAs grip one stretch of DNA, and the two GyrBs, which bind ATP, have caught a second stretch just above it.

Step 1 of 6Gyrase holds two stretches of DNA. The two GyrAs grip one stretch of DNA, and the two GyrBs, which bind ATP, have caught a second stretch just above it.

Point at a name or a part to light it.

DNA gyrase puts negative supercoils into the bacterium’s DNA, which undo the overwinding ahead of a replication fork, so the DNA can be copied; topoisomerase IV, cutting the same way, separates the copies. Fluoroquinolones trap both on DNA they have cut. In gram-negative bacteria the main target is usually gyrase, in gram-positives topoisomerase IV. Our own topoisomerases lack the two residues that anchor the drug’s magnesium bridge, which is part of why the drugs spare us.

Simplified: not to scale, the enzyme’s shapes simplified and the drug drawn larger than it is; the enzyme drawn as two halves, each a GyrA with a GyrB on top; the gate in the DNA and the gate at the enzyme’s foot drawn opening together, though they open in turn; gyrase’s wrapping of the DNA round itself before it cuts left out; the ATP that closes the GyrBs and drives each round left out; the magnesium held to GyrA through water and two of its residues, drawn as the ion alone; the drugs drawn face on beside the cuts, though each slips in between the base pairs; the drug drawn as its rings, chains and heavy atoms, its hydrogens left out; how a fork turns a trapped cut into a break simplified, the enzyme drawn coming away; topoisomerase IV, which works the same way and is trapped the same way, not drawn.

5 sources
  1. Aldred KJ, Kerns RJ, Osheroff N. Biochemistry 2014;53:1565–74. Mechanism of quinolone action and resistance
  2. Stevens CW. Brenner and Stevens' Pharmacology, 6th edition. Elsevier, 2023. Chapter 40, Other antimicrobial agents such as quinolones and antifolate drugs
  3. Parker N et al. Microbiology. OpenStax, 2016. 11.2 DNA replication
  4. Parker N et al. Microbiology. OpenStax, 2016. 14.3 Mechanisms of antibacterial drugs
  5. PubChem. Ciprofloxacin (CID 2764)

In gram-negatives the main target is usually gyrase, in gram-positives topoisomerase IV, though it varies with the species and the drug. Our own type II topoisomerases lack the residues that hold the water–metal bridge, which is part of why the drugs spare us.

Their killing is concentration-dependent: the higher the peak level, and the larger the area under the curve, against the bacterium's minimum inhibitory concentration, the better they work. The best effect comes with a peak at least ten times the MIC. They also hold bacteria back for 2 to 6 hours after levels have fallen, a long post-antibiotic effect, which, with their half-lives, lets them be given once or twice a day.

What they reach

  • Ciprofloxacin and ofloxacin: Enterobacterales (E. coli, Klebsiella, Proteus, Salmonella, Shigella), Campylobacter, Haemophilus, Moraxella, Neisseria, Legionella and Pseudomonas aeruginosa, ciprofloxacin more strongly than ofloxacin. Ciprofloxacin is not recommended for streptococcal infections, pneumococci among them.
  • Levofloxacin and moxifloxacin add pneumococci and reach the atypical Mycoplasma pneumoniae and Chlamydia pneumoniae better, and moxifloxacin some anaerobes; all of them reach Legionella. Moxifloxacin doesn't reach Pseudomonas.
  • Mycobacteria: Mycobacterium tuberculosis, against which levofloxacin and moxifloxacin are core drugs when it resists rifampicin.
  • Not reliably: MRSA, except with delafloxacin, enterococci, and most anaerobes.

How bacteria resist

  • Changed targets. Mutations in the genes for gyrase (gyrA) and topoisomerase IV (parC), often at the serine that holds the water–metal bridge, lower the drug's grip. They come step by step, each raising the level of resistance.
  • Less drug inside. Gram-negatives make fewer porins and pump more out through their own efflux pumps, which can raise resistance to several classes at once.
  • Plasmid genes. Qnr proteins shield the enzymes, a variant of an aminoglycoside enzyme, aac(6')-Ib-cr, acetylates ciprofloxacin and norfloxacin, and some plasmids carry pumps. Each gives only a little resistance, but it makes higher-level mutants easier to select.

Heavy use has made resistance common. In 2023, 24.0% of invasive E. coli across the EU and EEA resisted fluoroquinolones, from 10.1% to 42.9% between countries, with 33.7% of Klebsiella pneumoniae and 17.9% of Pseudomonas aeruginosa. ESBL producers commonly resist them too, and resistance to ciprofloxacin is rising in Campylobacter jejuni and Salmonella Enteritidis from patients in over half the European countries that report it. Most Campylobacter already resist it: 72% of C. jejuni from patients in a German series, 2018 to 2023.

Clinical indications

InfectionThe usual choice
Acute bacterial prostatitisciprofloxacin or ofloxacin for 14 days, first choice in the UK; trimethoprim if a fluoroquinolone isn't suitable
Chronic bacterial prostatitisa fluoroquinolone for 4 to 6 weeks, the European first choice
Pyelonephritisa short course first in much of Europe where under 10% of E. coli resist; in the UK, ciprofloxacin only when the first choices don't suit
Pseudomonas aeruginosaciprofloxacin or levofloxacin, as fluoroquinolones are the only antibiotics taken by mouth that reach it; inhaled levofloxacin for chronic infection in adults with cystic fibrosis
Community-acquired pneumonialevofloxacin or moxifloxacin, when the usual antibiotics can't be used, as in severe pneumonia in someone allergic to penicillin
Rifampicin-resistant tuberculosislevofloxacin or moxifloxacin, core drugs: moxifloxacin in the six-month BPaLM regimen, levofloxacin in the six-month BDLLfxC one (Antituberculosis drugs)
Mycoplasma genitalium resistant to macrolidesmoxifloxacin for 7 days, or 14 days when it has caused pelvic inflammatory disease or epididymitis
Pelvic inflammatory diseasemoxifloxacin for 14 days, one of the European first choices, above all when M. genitalium is the cause
Close contacts of meningococcal diseaseciprofloxacin, a single dose, at any age and in pregnancy
Severe bacterial diarrhoea (Salmonella, Shigella), typhoidciprofloxacin only when tests show the strain is susceptible: most Campylobacter, and most typhoid in travellers, no longer are, so azithromycin or ceftriaxone is used first
Deep neutropenia expected after chemotherapya fluoroquinolone by mouth while the count is low, to prevent infection; ciprofloxacin is the one licensed for it
Inhalational anthrax, to prevent and treatciprofloxacin or levofloxacin
Bacterial conjunctivitis and corneal ulcersciprofloxacin, ofloxacin, levofloxacin or moxifloxacin eye drops
at least, have reactions that can disable for months or for good
1 to 10in 10,000 treated
after the first dose a tendon can tear, or months after the last
48hours
in Europe resisted ciprofloxacin in 2022
65.9%of gonococci
in the EU and EEA resisted fluoroquinolones in 2023
24%of invasive E. coli

Adverse drug reactions

  • Life-threatening
    Long-lasting, disabling reactions of tendons, muscles, joints, nerves, mind and senses, among them a peripheral neuropathy that can be permanent. They occur at any age, with or without risk factors. The drug is stopped at the first symptom, and fluoroquinolones are avoided from then on.
  • Serious
    Tendinitis and tendon rupture, mostly of the Achilles tendon, sometimes on both sides, from 48 hours after the first dose to months after the last. The risk is higher over 60, with corticosteroids, kidney disease and organ transplants. At the first pain the drug is stopped and the limb rested.
  • Life-threatening
    Aortic aneurysm and dissection, a small added risk, mostly in older people. Sudden pain in the abdomen, chest or back is an emergency.
  • Serious
    Leaking heart valves: aortic and mitral regurgitation, a small added risk. Sudden breathlessness, palpitations or swelling of the legs or abdomen send the patient to a doctor.
  • Life-threatening
    A long QT interval and torsades de pointes, mostly with other risks: other drugs that lengthen it, low potassium or magnesium, heart disease, older age and female sex.
  • Life-threatening
    Worsening of myasthenia gravis, which has needed ventilation and caused deaths.
  • Serious
    A low or high blood sugar, mostly in diabetics on insulin or a sulfonylurea; hypoglycaemic coma has occurred. The blood sugar is watched.
  • Serious
    Seizures, status epilepticus among them, more likely with epilepsy, NSAIDs or theophylline.
  • Life-threatening
    Psychiatric reactions, even after the first dose: agitation, confusion, hallucinations, psychosis and depression, which can lead to suicidal thoughts and suicide. The drug is stopped.
  • Serious
    Clostridioides difficile colitis: severe or lasting diarrhoea, even weeks after the course. Outside hospital, fluoroquinolones are among the antibiotics most likely to bring it on.
  • Serious
    Liver injury: hepatitis and jaundice. The drug is stopped at jaundice, dark urine, itching or a tender abdomen.
  • Life-threatening
    Liver necrosis and liver failure, rare, sometimes fatal, reported with each of them.
  • Life-threatening
    Anaphylaxis, which can follow the first dose, and severe skin reactions: Stevens–Johnson syndrome, toxic epidermal necrolysis and DRESS.

Side effects

  • Mild
    Nausea and diarrhoea, the commonest.
  • Mild
    Headache, dizziness, restlessness and poor sleep; ciprofloxacin makes coffee more stimulating, as it slows the breakdown of caffeine.
  • Mild
    Sensitivity to sunlight, rare, so strong sun and sunbeds are avoided during the course.
  • Mild
    Crystals in the urine with ciprofloxacin, rare, mostly in an alkaline urine, so patients drink enough.
  • Mild
    Thrush, in the mouth or vagina.

Contraindications

  • Contraindicated
    An allergy to any quinolone.
  • Contraindicated
    A tendon disorder from a fluoroquinolone before, in the licences of levofloxacin, moxifloxacin, ofloxacin and delafloxacin; ciprofloxacin's says it should generally not be used.
  • Contraindicated
    Ciprofloxacin with tizanidine, duloxetine or agomelatine. Tizanidine's exposure rises about tenfold, with a fall in blood pressure and drowsiness. Duloxetine's and agomelatine's own licences rule ciprofloxacin out, as it blocks the CYP1A2 that clears them.
  • Contraindicated
    Moxifloxacin with a long QT or a risk of one: a long QT from birth or acquired, uncorrected low potassium, a slow heart rate that matters, heart failure with a low ejection fraction, past symptomatic arrhythmias, or other drugs that lengthen the QT. Also in severe liver disease, Child–Pugh C, or liver enzymes over five times normal.
  • Contraindicated
    Epilepsy, with levofloxacin and ofloxacin, which lower the seizure threshold.
  • Avoid
    Any other serious reaction to a quinolone before. Another is given only when there is no alternative.
  • Avoid
    Children and growing adolescents, for the cartilage harm seen in young animals. Ciprofloxacin is the exception, licensed for Pseudomonas in cystic fibrosis, complicated urinary infections and anthrax, and given as a single dose to meningococcal contacts. The licences of levofloxacin, moxifloxacin, ofloxacin and delafloxacin rule them out.
  • Avoid
    Corticosteroids, which add to the risk of tendon rupture and of aortic dissection.
  • Avoid
    An aortic aneurysm, heart valve disease, or a risk of either: a family history of aneurysm, Marfan or Ehlers–Danlos syndrome, Turner syndrome, Behçet's disease, high blood pressure, rheumatoid arthritis, giant cell or Takayasu arteritis, Sjögren's syndrome, known atherosclerosis, or for the valves congenital valve disease or endocarditis. Other antibiotics are considered first.
  • Avoid
    G6PD deficiency, in which quinolones can cause haemolysis. Ciprofloxacin is avoided unless the benefit outweighs the risk, ofloxacin's licence rules it out, and levofloxacin and moxifloxacin are used with caution, watching for haemolysis.
  • Avoid
    Ciprofloxacin with methotrexate, whose levels it raises.
  • Avoid
    Myasthenia gravis, which can worsen dangerously. Levofloxacin's and ofloxacin's licences advise against them; ciprofloxacin and moxifloxacin are used with caution.
  • Caution
    Drugs cleared by CYP1A2, with ciprofloxacin: theophylline, whose level is checked and dose cut, clozapine, olanzapine, ropinirole and caffeine.
  • Caution
    Other drugs that lengthen the QT, with ciprofloxacin and levofloxacin, and low potassium or magnesium, heart disease and older age.
  • Caution
    Warfarin and the other vitamin K antagonists, whose effect can rise, so the INR is checked often.
  • Caution
    Insulin and sulfonylureas, so the blood sugar is watched.
  • Caution
    Antacids, iron, zinc, sucralfate and phosphate binders, and calcium with ciprofloxacin, spaced from the dose.
  • Caution
    Conditions that lower the seizure threshold, with ciprofloxacin and moxifloxacin, and NSAIDs or theophylline, which lower it further.
  • Caution
    Age over 60, kidney disease and organ transplants, for the tendons; the dose of ciprofloxacin, ofloxacin and levofloxacin is lowered as the kidneys fail.

Pregnancy and lactation

  • Avoid
    Pregnancy. There is no good evidence that a quinolone harms the baby: the worry about growing cartilage comes from young animals. A different antibiotic is usually tried first, because of the drugs' own harms, but one can be given when it is the best treatment. The licences are stricter: levofloxacin's, moxifloxacin's, ofloxacin's and delafloxacin's rule them out, and ciprofloxacin's prefers to avoid it.
  • Compatible
    A single dose of ciprofloxacin in pregnancy, to prevent meningococcal disease in a close contact.
  • Compatible
    Breastfeeding with ciprofloxacin or ofloxacin, which pass into the milk in tiny amounts, and the calcium in milk may keep the baby from absorbing much of it; long courses are best avoided. The licences are stricter: ciprofloxacin's and ofloxacin's say not to breastfeed.
  • Caution
    Breastfeeding with levofloxacin or moxifloxacin, probably compatible, though ciprofloxacin or ofloxacin is preferred, above all for a newborn or a premature baby. Their licences rule breastfeeding out.

Check yourselfAnswer, then say how sure you were: a lucky guess still counts as a weak point.

1A man of 72 on prednisolone for polymyalgia rheumatica takes ciprofloxacin for prostatitis. On the third day his heel is painful and swollen. What should happen?

2A woman with COPD who takes theophylline is given ciprofloxacin. Three days later she has nausea, palpitations and a tremor. Why?

3Why are fluoroquinolones no longer given for simple cystitis in Europe?

4A man takes his ciprofloxacin with a glass of milk and an indigestion remedy, and his infection fails to settle. What went wrong?

5Why isn't ciprofloxacin given for gonorrhoea before tests show the strain is susceptible?

6A man who takes amiodarone and haloperidol needs treatment for pneumonia. Why is moxifloxacin ruled out?

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Portal hypertension

Norfloxacin or ciprofloxacin can prevent spontaneous bacterial peritonitis.

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Pneumonia

Levofloxacin and moxifloxacin, the respiratory quinolones, are kept for when first choices can’t be used.

DNA replication

Block bacterial topoisomerases: DNA gyrase and topoisomerase IV.

  • DNA replicationBiologyThe replication fork and its enzymes.
  • DNA replicationBiochemistryNot written yetThe same process, in more chemical detail.
  • DNA repairBiologyHow copying errors and damage are mended.
  • Antitumor chemotherapeuticalsAntimicrobials and chemotherapeuticsNot written yetMany cytotoxic drugs damage DNA or stop it being copied, so they hit dividing cells hardest.
  • Antiviral drugsAntimicrobials and chemotherapeuticsNot written yetAciclovir, a nucleoside analogue, stops herpesvirus DNA polymerase.